Package index

All functions

buildcompnet()

Network models of interspecific competition with presence-absence data

compnet compnet-package

The 'compnet' package.

compute_gofstats()

Compute summary statistics quantifying row/column-level and third order dependencies in a symmetric matrix with NA diagonals

ex_phylo

Phylogenetic distance between species pairs in a simulated metacommunity dataset with 24 species

ex_presabs

A simulated metacommunity presence-absence matrix in which rows represent sites and columns represent species

ex_traits

Species-level data for two traits in a simulated metacommunity dataset with 24 species

expit()

Inverse logit function

fixedeff_violins()

Violin plots of fixed effect coefficients in a compnet model

gofstats()

Report quantiles of gofstats values for observed data relative to posterior predictive distribution

postpredsamp()

Simulate posterior predictive samples from a compnet model

scatter_interaction()

Make an automated plot of the interactive effect of two species' values of the same trait.

scatter_interaction_getdata()

Get data for a plot of the interactive effect of two species' values of the same trait.

scatter_pairvar()

Make an automated plot of the effect of a pair-level variable like phylogenetic distance

scatter_pairvar_getdata()

Get data for a plot of the effect of a pair-level variable like phylogenetic distance

summarize_compnet()

Summarizing compnet model output